PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G03790.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 520aa    MW: 58521.7 Da    PI: 6.4747
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G03790.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.91e-26192288186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++d
  OGLUM11G03790.2 192 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLLD 285
                      7*********************8744455667777**********************************************55*********** PP

         trihelix  84 qle 86 
                      +++
  OGLUM11G03790.2 286 HMN 288
                      996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-20190313No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MWAPWSVGPA CQRETSCSAR PNISAEKEAE AEADCLLAGV QFSRRIPSLY SCASSCTPVS  60
ILYVTNKKLK CLGDRFGEME GSNPPGNMTQ GPSYGSLDLH GISKQMHPPN SGNQGFNQPQ  120
IPGNFTIPMD RVTEPDNISD GVQLGQHGKI AHHHHHHIHH SKNHGSDEEE HDMNEDAADG  180
KDKKGSPWHR MKWTDSMVKL LITAVSYTGE DPGADLGGGR RNYSMMQKKG KWKAISKVMG  240
ERGCHVSPQQ CEDKFNDLNK RYKRLTDILG RGTACNVVEN HSLLDHMNIS EKMKEDARKI  300
LNSKHLFYEE MCSYHNNNRI SLPEDPALQQ SLQLALRCKE DNDFMRHASG DAELDDDQSE  360
DSDYEENEEE HRAVDTNIRG PSMHKRMWHV VDHGDVGFVT SCSNDGSGRS DPYDVLDINK  420
PFPDGSDLAL VQKDLALKAA EIQKHRLQIE TKAVQLAKQR LKWEMFRKNK DLELEKLALE  480
NEQMMLQNKR EFTLKLGELF LTMNAEVKSK CGGLASQMAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205330.0AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBankAK1011540.0AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615140.10.0PREDICTED: uncharacterized protein LOC4349866 isoform X1
RefseqXP_015615141.10.0PREDICTED: uncharacterized protein LOC4349866 isoform X1
TrEMBLA0A0E0BFP90.0A0A0E0BFP9_9ORYZ; Uncharacterized protein
STRINGLOC_Os11g06410.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-86sequence-specific DNA binding transcription factors